PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034585.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 193aa    MW: 21763.1 Da    PI: 8.4327
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034585.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB136.48.1e-431841795
        NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                 mkk+lPan+ki+kdaketvqecvsefisf+tse     asdkcqrekrktingddllwa+atlGfedy++plkvyl+kyre ++
  Pbr034585.1  1 MKKALPANGKIAKDAKETVQECVSEFISFITSEydvvlASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTKYREGDT 84
                 9*******************************9888889*****************************************9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.5E-17160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.1E-281108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-39198IPR009072Histone-fold
PRINTSPR006151.2E-171937No hitNo description
PRINTSPR006151.2E-174361No hitNo description
PRINTSPR006151.2E-176280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKKALPANGK IAKDAKETVQ ECVSEFISFI TSEYDVVLAS DKCQREKRKT INGDDLLWAM  60
ATLGFEDYID PLKVYLTKYR EGDTKGSGKG GDSSSKKDVQ PSPNPQIARQ GSFSQGGNYS  120
NSQVISCSLF LHTYLFFRIF FSFNQVSLIL IVVQIIDGCP FIANIFPYKL LSFPSIYKQY  180
IYDIFLCRVL FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_A2e-341811994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B2e-341811994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162719.17e-73hypothetical protein PHAVU_001G174600g
RefseqXP_007162720.12e-72hypothetical protein PHAVU_001G174600g, partial
SwissprotQ67XJ28e-61NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLV7CX892e-72V7CX89_PHAVU; Uncharacterized protein (Fragment)
TrEMBLV7CZA77e-73V7CZA7_PHAVU; Uncharacterized protein
STRINGGLYMA19G36220.25e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-51nuclear factor Y, subunit B10